Basic Information
Locus ID:
gene:TRIDC1AG059300
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 565321466 | 565329957 | + | gene:TRIDC1AG059300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 112,710.47 Da | 42.09 | 71.57 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 587 | 864 | 2.99E-22 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 388 | 861 | 1.1E-21 | IPR015943 |
| SMART | SM00384 | AT_hook_2 | 244 | 256 | 1.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 290 | 302 | 1.8 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 336 | 348 | 9.5 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 267 | 279 | 1.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 313 | 325 | 9.5 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 359 | 371 | 22.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 221 | 233 | 110.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 198 | 210 | 17.0 | IPR017956 |
| SMART | SM00320 | WD40_4 | 668 | 704 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 760 | 799 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 713 | 756 | 4.7 | IPR001680 |
| PRINTS | PR00929 | AT-hook-like domain signature | 265 | 276 | 1.1E-8 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 244 | 254 | 1.1E-8 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 288 | 298 | 1.1E-8 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 431 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19485.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037426996.1 | uncharacterized protein LOC119292260 isoform X1 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B5Y6S2 | General transcription factor 3C polypeptide 2 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG059300.