Basic Information
Locus ID:
gene:TRIDC1AG058540
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
UBI3
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-48-linked is involved in protein degradation via the proteasome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 562374049 | 562378761 | - | gene:TRIDC1AG058540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.83 | 17,668.35 Da | 34.07 | 73.61 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01803 | Ubl_ubiquitin | 1 | 76 | 4.46343E-55 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 5.9E-34 | IPR000626 |
| Pfam | PF01599 | Ribosomal protein S27a | 102 | 148 | 1.0E-25 | IPR002906 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 100 | 153 | 3.48E-20 | IPR011332 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 93 | 3.94E-35 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 4.5E-46 | - |
| Gene3D | G3DSA:6.20.50.150 | - | 81 | 155 | 1.4E-38 | IPR038582 |
| SMART | SM00213 | ubq_7 | 1 | 72 | 3.0E-35 | IPR000626 |
| SMART | SM01402 | Ribosomal_S27_2 | 102 | 148 | 2.5E-28 | IPR002906 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 30.452106 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 27 | 52 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 6.0E-39 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 6.0E-39 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 53 | 74 | 6.0E-39 | IPR019956 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47110.1 | ubiquitin 6. polyubiquitin gene | 0 |
| RefSeq | XP_003568865.1 | ubiquitin-40S ribosomal protein S27a [Brachypodium distachyon] | 0 |
| P0CG86 | Ubiquitin-ribosomal protein eS31z fusion protein OS=Hordeum vulgare OX=4513 GN=MUB1 PE=3 SV=1 | 0 | |
| TrEMBL | W5ADS2 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG058540.