Basic Information
Locus ID:
gene:TRIDC1AG055510
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Guanine nucleotide-binding protein subunit beta-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 550057372 | 550059865 | - | gene:TRIDC1AG055510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 38,917.45 Da | 40.23 | 82.90 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 37 | 353 | 5.89044E-87 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 189 | 222 | 6.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 229 | 264 | 2.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 137 | 172 | 9.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 278 | 304 | 0.0062 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 38 | 74 | 2.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 329 | 352 | 0.0061 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 130 | 3.8E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 36 | 356 | 2.38E-74 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 35 | 356 | 1.8E-129 | IPR015943 |
| SMART | SM00320 | WD40_4 | 34 | 74 | 6.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 6.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 304 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 264 | 3.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 222 | 7.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 353 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 1.9E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 232 | 273 | 15.019908 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 134 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 188 | 231 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 188 | 225 | 10.917412 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 41 | 77 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 41 | 77 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 172 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 232 | 269 | 11.444681 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 172 | 12.314676 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 251 | 265 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 117 | 131 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 61 | 75 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 209 | 223 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 9.6E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 209 | 223 | 9.6E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 61 | 75 | 9.6E-9 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18080.1 | Transducin/WD40 repeat-like superfamily protein. Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. | 0 |
| RefSeq | XP_037425140.1 | guanine nucleotide-binding protein subunit beta-like protein A [Triticum dicoccoides] | 0 |
| P49027 | Small ribosomal subunit protein RACK1z OS=Oryza sativa subsp. japonica OX=39947 GN=RACK1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5Y5J8 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG055510.