Basic Information
Locus ID:
gene:TRIDC1AG055030
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 548705767 | 548714589 | - | gene:TRIDC1AG055030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 83,880.66 Da | 39.39 | 97.43 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 557 | 627 | 1.9955E-17 | - |
| Pfam | PF00240 | Ubiquitin family | 557 | 631 | 1.4E-17 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 637 | 711 | 1.3E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 635 | 714 | 5.63E-18 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 555 | 633 | 4.6E-19 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 481 | 549 | 2.53E-5 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 554 | 633 | 1.1E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 634 | 739 | 1.4E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 481 | 553 | 9.2E-6 | - |
| SMART | SM00213 | ubq_7 | 555 | 629 | 7.3E-14 | IPR000626 |
| SMART | SM00213 | ubq_7 | 635 | 710 | 1.3E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 557 | 633 | 17.996576 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 482 | 551 | 9.286418 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 635 | 714 | 17.909475 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 665 | 690 | - | IPR019954 |
| Coils | Coil | Coil | 365 | 392 | - | - |
| Coils | Coil | Coil | 217 | 237 | - | - |
| Coils | Coil | Coil | 312 | 346 | - | - |
| Coils | Coil | Coil | 267 | 294 | - | - |
| Coils | Coil | Coil | 404 | 424 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55060.1 | ubiquitin 12. Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product | 0 |
| RefSeq | XP_037425107.1 | uncharacterized protein LOC119290347 [Triticum dicoccoides] | 0 |
| Q3E7K8 | Polyubiquitin 12 OS=Arabidopsis thaliana OX=3702 GN=UBQ12 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8R7K434 | Ubiquitin-like domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG055030.