Basic Information
Locus ID:
gene:TRIDC1AG053710
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 543341146 | 543349302 | + | gene:TRIDC1AG053710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 34,745.64 Da | 50.99 | 78.64 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 23 | 49 | 0.0047 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 101 | 138 | 2.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 268 | 0.0033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 302 | 2.25E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 238 | 313 | 3.6E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 237 | 1.9E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 183 | 224 | 9.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 268 | 2.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 10 | 49 | 0.0048 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 308 | 7.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 138 | 2.9E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 106 | 140 | 11.840134 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 236 | 271 | 9.467419 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 106 | 140 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 17 | 58 | 10.34136 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 236 | 277 | 11.64467 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 255 | 269 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 36 | 50 | 7.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 125 | 139 | 7.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 255 | 269 | 7.8E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14530.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037424593.1 | protein ANTHESIS POMOTING FACTOR 1-like [Triticum dicoccoides] | 0 |
| Q9LYK6 | Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=APRF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5Y5P4 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG053710.