Basic Information
Locus ID:
gene:TRIDC1AG052710
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 539141634 | 539145477 | - | gene:TRIDC1AG052710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.30 | 46,754.30 Da | 37.57 | 87.00 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 95 | 425 | 3.5641E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 95 | 130 | 1.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 257 | 0.079 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 388 | 425 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 383 | 2.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 179 | 214 | 7.1E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 58 | 427 | 1.1E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 56 | 230 | 3.6E-44 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 231 | 320 | 4.0E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 430 | 5.2E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 52 | 88 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 259 | 0.83 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 425 | 7.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 4.3E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 342 | 93.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 2.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 301 | 0.73 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 3.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 0.21 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 15.755108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 351 | 383 | 10.179234 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 130 | 12.657402 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 393 | 430 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 392 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 393 | 430 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 15.955617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 182 | 214 | 12.894674 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 1.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 370 | 384 | 1.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 329 | 343 | 1.8E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71840.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_048552809.1 | angio-associated migratory cell protein-like [Triticum urartu] | 0 |
| TrEMBL | A0A452ZP48 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG052710.