Basic Information
Locus ID:
gene:TRIDC1AG050250
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Dip2/Utp12 Family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 529083997 | 529088872 | - | gene:TRIDC1AG050250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 95,419.29 Da | 41.89 | 86.77 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 305 | 607 | 3.13533E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 383 | 4.5E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 512 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 390 | 426 | 3.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 120 | 154 | 0.085 | IPR001680 |
| Pfam | PF04003 | Dip2/Utp12 Family | 757 | 862 | 1.6E-26 | IPR007148 |
| Pfam | PF00400 | WD domain, G-beta repeat | 525 | 554 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 273 | 634 | 4.87E-60 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 309 | 1.32E-21 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 578 | 727 | 3.0E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 217 | 429 | 2.7E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 434 | 577 | 5.6E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 214 | 3.4E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 70 | 107 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 554 | 5.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 205 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 616 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 426 | 1.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 512 | 1.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 117 | 156 | 0.071 | IPR001680 |
| SMART | SM00320 | WD40_4 | 29 | 67 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 685 | 716 | 91.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 342 | 89.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 522 | 554 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 480 | 513 | 12.235586 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 394 | 427 | 11.550137 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 522 | 554 | 9.256512 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 352 | 383 | 11.65559 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 394 | 427 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 352 | 383 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 480 | 513 | 14.819399 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 413 | 427 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 499 | 513 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 371 | 385 | 3.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 499 | 513 | 3.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 413 | 427 | 3.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 246 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15440.1 | periodic tryptophan protein 2. | 0 |
| RefSeq | XP_037422739.1 | periodic tryptophan protein 2-like [Triticum dicoccoides] | 0 |
| Q8VYZ5 | Periodic tryptophan protein 2 OS=Arabidopsis thaliana OX=3702 GN=PWP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5Y4C6 | Utp12 domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG050250.