Basic Information
Locus ID:
gene:TRIDC1AG048940
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD-like zinc-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 521151823 | 521157034 | + | gene:TRIDC1AG048940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 110,506.87 Da | 55.66 | 61.35 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17734 | BRCT_Bard1_rpt1 | 791 | 866 | 1.04793E-29 | - |
| Pfam | PF13639 | Ring finger domain | 34 | 73 | 1.3E-8 | IPR001841 |
| Pfam | PF00533 | BRCA1 C Terminus (BRCT) domain | 807 | 864 | 2.8E-7 | IPR001357 |
| Pfam | PF16589 | BRCT domain, a BRCA1 C-terminus domain | 900 | 1010 | 1.4E-6 | IPR001357 |
| Pfam | PF13771 | PHD-like zinc-binding domain | 665 | 743 | 1.6E-9 | - |
| SUPERFAMILY | SSF52113 | BRCT domain | 902 | 1009 | 1.57E-8 | IPR036420 |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 97 | 1.69E-20 | - |
| SUPERFAMILY | SSF52113 | BRCT domain | 791 | 882 | 8.64E-24 | IPR036420 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 621 | 746 | 3.7E-23 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 107 | 5.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 788 | 894 | 5.2E-30 | IPR036420 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 899 | 1005 | 2.5E-20 | IPR036420 |
| SMART | SM00292 | BRCT_7 | 784 | 867 | 4.0E-12 | IPR001357 |
| SMART | SM00292 | BRCT_7 | 900 | 1005 | 8.1E-7 | IPR001357 |
| SMART | SM00184 | ring_2 | 35 | 72 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 35 | 73 | 12.607302 | IPR001841 |
| ProSiteProfiles | PS51805 | Extended PHD (ePHD) domain profile. | 624 | 744 | 20.345259 | IPR034732 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 898 | 1010 | 12.39372 | IPR001357 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 802 | 877 | 13.28396 | IPR001357 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 50 | 59 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 458 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21070.1 | breast cancer susceptibility1. Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control. | 0 |
| RefSeq | XP_037421724.1 | protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Triticum dicoccoides] | 0 |
| Q8RXD4 | Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana OX=3702 GN=BRCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5Y524 | RING-type E3 ubiquitin transferase BRCA1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG048940.