Basic Information
Locus ID:
gene:TRIDC1AG047050
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 509826547 | 509830979 | + | gene:TRIDC1AG047050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 45,373.31 Da | 55.57 | 68.52 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16531 | RING-HC_RING1_like | 32 | 72 | 2.68001E-24 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 31 | 71 | 6.0E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 22 | 103 | 1.14E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 281 | 365 | 1.8E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 95 | 2.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 32 | 71 | 8.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 32 | 72 | 12.002429 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 48 | 57 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 204 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44280.1 | RING 1A. Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. | 0 |
| RefSeq | XP_037420593.1 | putative E3 ubiquitin-protein ligase RING1a isoform X2 [Triticum dicoccoides] | 0 |
| Q9FKW0 | Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana OX=3702 GN=RING1A PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B5Y418 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG047050.