Basic Information
Locus ID:
gene:TRIDC1AG046740
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
protein Sb04g004280 source
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 508118619 | 508122457 | - | gene:TRIDC1AG046740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 69,410.70 Da | 50.67 | 89.70 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 393 | 461 | 2.4E-24 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 247 | 305 | 1.5E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 478 | 545 | 8.6E-19 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 314 | 384 | 3.9E-21 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 388 | 461 | 1.92E-26 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 237 | 310 | 7.88E-17 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 473 | 545 | 6.83E-20 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 309 | 384 | 3.75E-23 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 554 | 624 | 3.24E-7 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 309 | 387 | 1.8E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 388 | 469 | 3.1E-31 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 208 | 306 | 8.3E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 470 | 550 | 6.3E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 551 | 624 | 2.0E-6 | - |
| SMART | SM00213 | ubq_7 | 554 | 620 | 0.54 | IPR000626 |
| SMART | SM00213 | ubq_7 | 226 | 308 | 3.4E-14 | IPR000626 |
| SMART | SM00213 | ubq_7 | 312 | 383 | 6.6E-22 | IPR000626 |
| SMART | SM00213 | ubq_7 | 391 | 462 | 1.2E-24 | IPR000626 |
| SMART | SM00213 | ubq_7 | 474 | 545 | 1.1E-17 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 391 | 461 | 23.375101 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 226 | 312 | 19.390202 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 312 | 383 | 20.849154 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 474 | 545 | 20.34832 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 417 | 442 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 500 | 525 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 401 | 421 | 1.6E-19 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 422 | 442 | 1.6E-19 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 443 | 464 | 1.6E-19 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 105 | - | - |
| Coils | Coil | Coil | 131 | 151 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05320.1 | polyubiquitin 10. One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. | 0 |
| RefSeq | XP_037420303.1 | polyubiquitin-I-like isoform X2 [Triticum dicoccoides] | 0 |
| P69322 | Polyubiquitin OS=Pisum sativum OX=3888 GN=PU1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B5Y3X6 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG046740.