Basic Information
Locus ID:
gene:TRIDC1AG045460
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 500878374 | 500880826 | - | gene:TRIDC1AG045460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.38 | 40,987.57 Da | 48.81 | 76.15 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 236 | 278 | 6.4E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 40 | 72 | 7.5E-12 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 230 | 283 | 3.31E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 284 | 1.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 237 | 277 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 237 | 278 | 12.223724 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 327 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55530.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037419459.1 | E3 ubiquitin-protein ligase SIRP1-like [Triticum dicoccoides] | 0 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | M7Z9G0 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 GN=TRIUR3_06847 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG045460.