Basic Information
Locus ID:
gene:TRIDC1AG043950
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 493614383 | 493617214 | + | gene:TRIDC1AG043950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 61,413.71 Da | 77.68 | 64.99 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 236 | 280 | 4.27381E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 237 | 278 | 2.1E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 237 | 284 | 7.07E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 297 | 3.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 238 | 278 | 3.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 238 | 279 | 13.861307 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 253 | 262 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 553 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 86 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037418927.1 | uncharacterized protein LOC119283519 [Triticum dicoccoides] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5Y2Z1 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG043950.