Basic Information
Locus ID:
gene:TRIDC1AG039410
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 461549062 | 461554415 | - | gene:TRIDC1AG039410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 87,804.94 Da | 44.28 | 94.40 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 16 | 65 | 3.4E-8 | IPR001841 |
| Pfam | PF00400 | WD domain, G-beta repeat | 531 | 562 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 663 | 693 | 0.02 | IPR001680 |
| SUPERFAMILY | SSF57850 | RING/U-box | 15 | 73 | 2.76E-11 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 530 | 805 | 4.45E-39 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 227 | 441 | 1.51E-9 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 483 | 627 | 3.8E-15 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 257 | 444 | 9.3E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 95 | 2.6E-15 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 628 | 823 | 7.5E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 612 | 654 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 606 | 0.082 | IPR001680 |
| SMART | SM00320 | WD40_4 | 525 | 562 | 0.25 | IPR001680 |
| SMART | SM00320 | WD40_4 | 657 | 694 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 697 | 738 | 9.9 | IPR001680 |
| SMART | SM00184 | ring_2 | 17 | 65 | 2.8E-9 | IPR001841 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 532 | 571 | 9.773251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 664 | 693 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 17 | 66 | 12.813844 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 36 | 45 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 504 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21651.1 | zinc ion binding. | 0 |
| RefSeq | XP_037416972.1 | uncharacterized protein LOC119280096 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B5Y1U2 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG039410.