Basic Information
Locus ID:
gene:TRIDC1AG038120
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 449105291 | 449112506 | - | gene:TRIDC1AG038120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 51,088.84 Da | 43.90 | 69.34 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 360 | 403 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 209 | 234 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 322 | 0.0081 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 277 | 3.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 408 | 442 | 8.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 103 | 446 | 2.66E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 363 | 458 | 1.6E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 78 | 362 | 4.3E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 190 | 234 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 322 | 7.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 358 | 403 | 0.42 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 446 | 6.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 95 | 131 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 277 | 2.1E-7 | IPR001680 |
| PIRSF | PIRSF038135 | WD_rpt_23 | 1 | 457 | 9.2E-196 | IPR017399 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 290 | 324 | 9.335602 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 277 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 446 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 243 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 277 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 331 | 11.310488 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 221 | 235 | 6.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 264 | 278 | 6.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 309 | 323 | 6.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03020.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037416203.1 | LEC14B protein-like [Triticum dicoccoides] | 0 |
| Q40153 | LEC14B protein OS=Lithospermum erythrorhizon OX=34254 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5Y2M2 | LEC14B homolog OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG038120.