Basic Information
Locus ID:
gene:TRIDC1AG028640
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 344119146 | 344123184 | + | gene:TRIDC1AG028640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 51,831.49 Da | 48.30 | 82.94 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13637 | Ankyrin repeats (many copies) | 154 | 215 | 3.2E-9 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 15 | 99 | 8.7E-18 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 12 | 247 | 1.27E-48 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 288 | 350 | 3.81E-9 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 130 | 3.1E-30 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 276 | 359 | 8.3E-9 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 132 | 246 | 6.4E-22 | IPR036770 |
| SMART | SM00248 | ANK_2a | 151 | 180 | 7.8E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 10 | 39 | 3.5E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 109 | 22.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 43 | 72 | 0.0016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 194 | 226 | 0.0013 | IPR002110 |
| SMART | SM00184 | ring_2 | 293 | 342 | 3.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 293 | 343 | 10.202563 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 43 | 75 | 8.81647 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 10 | 42 | 15.0399 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 194 | 220 | 10.869141 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 98 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 10 | 41 | 13.920248 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 151 | 183 | 12.87639 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 77 | 98 | 9.118069 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 151 | 180 | 12.195709 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 194 | 220 | 10.89985 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 308 | 317 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 446 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_037410014.1 | probable E3 ubiquitin-protein ligase XBOS33 [Triticum dicoccoides] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A452YNK3 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG028640.