Basic Information
Locus ID:
gene:TRIDC1AG025210
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 297720625 | 297726956 | + | gene:TRIDC1AG025210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 89,196.19 Da | 37.72 | 82.54 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 213 | 1.4151E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 213 | 1.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 129 | 8.5E-6 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 644 | 804 | 1.5E-49 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 171 | 4.4E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 52 | 87 | 0.005 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 44 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 287 | 3.66E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 306 | 4.6E-67 | IPR015943 |
| SMART | SM00320 | WD40_4 | 174 | 213 | 4.3E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 262 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 45 | 0.021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 87 | 6.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 129 | 7.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 171 | 1.4E-11 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 12 | 54 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 55 | 89 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 139 | 176 | 13.685579 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 96 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 216 | 12.367405 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 139 | 180 | 17.693363 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 97 | 131 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 222 | 15.554599 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 158 | 172 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 200 | 214 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 7.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 116 | 130 | 7.0E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 200 | 214 | 7.0E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 807 | 19.458885 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 376 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037408001.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like [Triticum dicoccoides] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5XYM9 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG025210.