Basic Information
Locus ID:
gene:TRIDC1AG024080
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 282889891 | 282897342 | - | gene:TRIDC1AG024080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 35,564.33 Da | 60.19 | 86.32 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 175 | 221 | 4.66389E-13 | - |
| Pfam | PF12906 | RING-variant domain | 175 | 220 | 3.3E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 170 | 223 | 4.59E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 223 | 8.3E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 174 | 221 | 1.6E-12 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 167 | 227 | 17.988716 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45530.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037407121.1 | uncharacterized protein LOC119269397 isoform X1 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A452YGC8 | RING-CH-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG024080.