Basic Information
Locus ID:
gene:TRIDC1AG022320
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 256098014 | 256104113 | - | gene:TRIDC1AG022320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 58,593.22 Da | 46.70 | 87.10 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 217 | 515 | 2.85458E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 479 | 515 | 2.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 298 | 8.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 437 | 472 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 253 | 9.9E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 212 | 515 | 2.06E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 476 | 9.2E-50 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 477 | 520 | 2.8E-8 | IPR015943 |
| SMART | SM00667 | Lish | 20 | 52 | 0.0028 | IPR006594 |
| SMART | SM00320 | WD40_4 | 431 | 473 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 356 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 427 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 476 | 516 | 7.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 3.2E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 483 | 524 | 12.209223 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 20 | 52 | 9.30194 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 483 | 515 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 221 | 262 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 303 | 11.339228 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 221 | 255 | 9.783781 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 307 | 14.151034 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_048529278.1 | WD repeat-containing protein WDS homolog [Triticum urartu] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7P0X7 | LisH domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG022320.