Basic Information
Locus ID:
gene:TRIDC1AG022270
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
VWA / Hh protein intein-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 255800090 | 255802008 | - | gene:TRIDC1AG022270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 67,484.96 Da | 54.15 | 71.07 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 6 | 51 | 4.54616E-5 | - |
| CDD | cd01466 | vWA_C3HC4_type | 169 | 342 | 1.06144E-53 | - |
| Pfam | PF14624 | VWA / Hh protein intein-like | 520 | 612 | 2.7E-20 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 170 | 353 | 6.0E-21 | IPR002035 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 57 | 2.89E-6 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 166 | 355 | 4.45E-33 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 170 | 356 | 7.2E-46 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 69 | 4.0E-6 | IPR013083 |
| SMART | SM00327 | VWA_4 | 168 | 353 | 1.1E-23 | IPR002035 |
| SMART | SM00184 | ring_2 | 6 | 50 | 0.0033 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 6 | 51 | 9.317383 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 170 | 355 | 15.976277 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 634 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037405763.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452YCM7 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG022270.