Basic Information
Locus ID:
gene:TRIDC1AG022220
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 255293904 | 255309542 | - | gene:TRIDC1AG022220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 68,997.31 Da | 43.08 | 65.47 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 154 | 472 | 8.15693E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 153 | 187 | 5.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 383 | 4.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 336 | 0.026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 289 | 0.017 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 143 | 471 | 2.98E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 113 | 243 | 8.0E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 244 | 485 | 1.8E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 197 | 234 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 289 | 0.0052 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 337 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 187 | 5.9E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 189 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 341 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 392 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 256 | 298 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 256 | 291 | 9.678328 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 351 | 385 | 11.971952 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 189 | 12.647216 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 276 | 290 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 276 | 290 | 6.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 370 | 384 | 6.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 324 | 338 | 6.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 140 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20330.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037405694.1 | WD repeat-containing protein 70-like [Triticum dicoccoides] | 0 |
| Q0VA16 | WD repeat-containing protein 70 OS=Xenopus tropicalis OX=8364 GN=wdr70 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5XY07 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG022220.