Basic Information
Locus ID:
gene:TRIDC1AG018190
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 152683081 | 152683800 | + | gene:TRIDC1AG018190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 25,353.53 Da | 77.65 | 79.46 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 156 | 196 | 2.99353E-15 | - |
| Pfam | PF13639 | Ring finger domain | 153 | 196 | 5.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 202 | 7.83E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 201 | 1.7E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 154 | 195 | 7.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 154 | 196 | 12.282736 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35000.1 | RING/U-box superfamily protein. E3 ligase-like protein induced by chitin oligomers. | 0 |
| RefSeq | XP_037413477.1 | RING-H2 finger protein ATL39-like [Triticum dicoccoides] | 0 |
| O64763 | E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5XWW4 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG018190.