Basic Information
Locus ID:
gene:TRIDC1AG016950
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 131548174 | 131555368 | - | gene:TRIDC1AG016950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 44,482.55 Da | 68.70 | 46.41 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 1 | 46 | 4.29346E-6 | - |
| Pfam | PF13639 | Ring finger domain | 1 | 46 | 6.7E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 48 | 4.71E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 55 | 2.4E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 1 | 45 | 9.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 2 | 46 | 10.143551 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 256 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05545.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044460192.1 | E3 ubiquitin-protein ligase RFI2-like [Triticum aestivum] | 0 |
| Q5Z8R1 | E3 ubiquitin-protein ligase IPI1 OS=Oryza sativa subsp. japonica OX=39947 GN=IPI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7NY25 | RING-type domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG016950.