Basic Information
Locus ID:
gene:TRIDC1AG012570
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 78551924 | 78558239 | - | gene:TRIDC1AG012570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 54,744.73 Da | 51.97 | 76.36 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 40 | 69 | 6.4E-5 | IPR002110 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 461 | 507 | 3.1E-13 | - |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 78 | 126 | 8.0E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 8 | 128 | 3.11E-26 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 462 | 508 | 5.81E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 440 | 513 | 5.8E-15 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 2 | 129 | 2.1E-26 | IPR036770 |
| SMART | SM00184 | ring_2 | 463 | 501 | 0.0033 | IPR001841 |
| SMART | SM00248 | ANK_2a | 108 | 136 | 1500.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 75 | 104 | 0.095 | IPR002110 |
| SMART | SM00248 | ANK_2a | 39 | 69 | 9.3E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 75 | 101 | 9.33032 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 75 | 107 | 10.44578 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 39 | 69 | 10.444637 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 463 | 502 | 11.22052 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 39 | 72 | 11.08682 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 346 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23280.2 | XB3 ortholog 5 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_037486111.1 | probable E3 ubiquitin-protein ligase XBOS34 [Triticum dicoccoides] | 0 |
| Q7XI08 | Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5XVR0 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG012570.