Basic Information
Locus ID:
gene:TRIDC1AG012340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 75490585 | 75499957 | - | gene:TRIDC1AG012340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 53,186.84 Da | 48.33 | 68.20 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 274 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 406 | 438 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 319 | 8.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 359 | 400 | 0.022 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 105 | 442 | 3.14E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 337 | 465 | 1.9E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 87 | 198 | 7.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 199 | 336 | 2.9E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 234 | 274 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 355 | 400 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 2.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 175 | 69.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 442 | 0.0089 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 0.85 | IPR001680 |
| SMART | SM00320 | WD40_4 | 94 | 130 | 24.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 328 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 241 | 274 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 241 | 274 | 10.469233 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 321 | 10.785595 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 261 | 275 | 9.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 306 | 320 | 9.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 387 | 401 | 9.7E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03020.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037485987.1 | LEC14B homolog [Triticum dicoccoides] | 0 |
| O24467 | LEC14B homolog OS=Prunus armeniaca OX=36596 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5XVI2 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG012340.