Basic Information
Locus ID:
gene:TRIDC1AG011980
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 71616302 | 71620681 | - | gene:TRIDC1AG011980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 95,139.53 Da | 50.00 | 71.44 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 813 | 861 | 7.3E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 809 | 861 | 2.16E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 802 | 865 | 3.4E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 816 | 856 | 9.907503 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 371 | - | - |
| Coils | Coil | Coil | 549 | 632 | - | - |
| Coils | Coil | Coil | 661 | 702 | - | - |
| Coils | Coil | Coil | 732 | 766 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03000.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037485803.1 | putative E3 ubiquitin-protein ligase RF298 [Triticum dicoccoides] | 0 |
| Q0WPJ7 | Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana OX=3702 GN=RF298 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5XVE0 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG011980.