Basic Information
Locus ID:
gene:TRIDC1AG003820
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
protein modification by small protein conjugation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 15514136 | 15516908 | - | gene:TRIDC1AG003820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 48,272.29 Da | 49.16 | 82.82 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 17 | 110 | 1.8E-10 | IPR020683 |
| Pfam | PF13606 | Ankyrin repeat | 196 | 221 | 0.0024 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 115 | 183 | 7.4E-10 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 16 | 251 | 6.61E-49 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 379 | 1.83E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 382 | 2.1E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 194 | 255 | 1.3E-10 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 111 | 193 | 2.7E-17 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 110 | 2.9E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 113 | 142 | 0.058 | IPR002110 |
| SMART | SM00248 | ANK_2a | 158 | 187 | 1.3E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 195 | 224 | 0.94 | IPR002110 |
| SMART | SM00248 | ANK_2a | 79 | 108 | 2.0E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 11 | 40 | 4400.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 46 | 75 | 0.0016 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 79 | 111 | 10.36565 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 195 | 221 | 11.08139 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 158 | 190 | 12.71613 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 158 | 183 | 12.03652 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 195 | 227 | 12.12851 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 324 | 373 | 9.287877 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 79 | 106 | 9.224194 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 46 | 78 | 11.346704 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 46 | 78 | 12.71613 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 429 | - | - |
| Coils | Coil | Coil | 273 | 293 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28840.1 | XB3 ortholog 1 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_037481740.1 | E3 ubiquitin-protein ligase XB3-like [Triticum dicoccoides] | 0 |
| Q65XV2 | E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica OX=39947 GN=XB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7JV24 | RING-type domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG003820.