Basic Information
Locus ID:
gene:TRIDC1AG003480
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 13704564 | 13712247 | + | gene:TRIDC1AG003480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 39,157.54 Da | 41.78 | 67.21 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 116 | 145 | 0.0095 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 277 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 73 | 102 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 35 | 59 | 0.0047 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 27 | 310 | 1.79E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 346 | 5.6E-109 | IPR015943 |
| SMART | SM00320 | WD40_4 | 65 | 103 | 3.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 106 | 145 | 5.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 150 | 184 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 277 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 188 | 228 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 21 | 60 | 0.0022 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 113 | 147 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 71 | 112 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 28 | 61 | 8.702878 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 252 | 286 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 113 | 154 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 28 | 69 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 71 | 102 | 8.676514 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 264 | 278 | 2.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 132 | 146 | 2.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 47 | 61 | 2.0E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80670.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_037481617.1 | protein RAE1-like [Triticum dicoccoides] | 0 |
| Q38942 | Protein RAE1 OS=Arabidopsis thaliana OX=3702 GN=RAE1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A452XMV5 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG003480.