Basic Information
Locus ID:
gene:TRIDC1AG002630
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 10985020 | 10990135 | - | gene:TRIDC1AG002630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 71,307.78 Da | 56.72 | 63.89 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 487 | 531 | 2.6768E-7 | - |
| CDD | cd15489 | PHD_SF | 587 | 627 | 7.12396E-5 | - |
| Pfam | PF12738 | twin BRCT domain | 22 | 83 | 9.1E-22 | IPR001357 |
| Pfam | PF13639 | Ring finger domain | 486 | 532 | 1.8E-8 | IPR001841 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 582 | 630 | 9.3E-8 | IPR011011 |
| SUPERFAMILY | SSF57850 | RING/U-box | 476 | 538 | 8.01E-15 | - |
| SUPERFAMILY | SSF52113 | BRCT domain | 18 | 102 | 7.2E-23 | IPR036420 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 459 | 566 | 9.9E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 570 | 632 | 1.4E-5 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10190 | BRCT domain | 15 | 101 | 1.9E-25 | IPR036420 |
| SMART | SM00184 | ring_2 | 487 | 531 | 8.5E-7 | IPR001841 |
| SMART | SM00292 | BRCT_7 | 15 | 91 | 7.0E-13 | IPR001357 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 487 | 532 | 12.740079 | IPR001841 |
| ProSiteProfiles | PS50172 | BRCT domain profile. | 18 | 101 | 17.123121 | IPR001357 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 503 | 512 | - | IPR017907 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 587 | 627 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 122 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67180.1 | zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein. | 0 |
| RefSeq | XP_037481316.1 | uncharacterized protein LOC119359077 isoform X1 [Triticum dicoccoides] | 0 |
| O04251 | BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana OX=3702 GN=At4g02110 PE=4 SV=3 | 0 | |
| TrEMBL | A0A3B5XTV4 | BRCT domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG002630.