Basic Information
Locus ID:
gene:TRIDC1AG000340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
SAD/SRA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 1A | 3079433 | 3089600 | - | gene:TRIDC1AG000340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 85,404.74 Da | 57.10 | 57.96 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 514 | 544 | 1.3E-10 | IPR027370 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 141 | 186 | 9.2E-9 | - |
| Pfam | PF02182 | SAD/SRA domain | 275 | 423 | 2.5E-51 | IPR003105 |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 207 | 1.15E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 507 | 595 | 6.63E-13 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 3 | 61 | 2.47E-9 | IPR011011 |
| SUPERFAMILY | SSF88697 | PUA domain-like | 246 | 440 | 6.46E-66 | IPR015947 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 63 | 9.1E-7 | IPR013083 |
| Gene3D | G3DSA:2.30.280.10 | - | 242 | 438 | 4.0E-74 | IPR036987 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 211 | 1.2E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 499 | 623 | 5.9E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 11 | 58 | 9.4E-6 | IPR001965 |
| SMART | SM00466 | G9a_1 | 257 | 424 | 3.5E-69 | IPR003105 |
| SMART | SM00184 | ring_2 | 514 | 570 | 3.8E-9 | IPR001841 |
| SMART | SM00184 | ring_2 | 143 | 181 | 0.001 | IPR001841 |
| SMART | SM00184 | ring_2 | 12 | 57 | 3.1 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 514 | 570 | 11.102496 | IPR001841 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 9 | 60 | 9.1607 | IPR019787 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 143 | 182 | 11.441815 | IPR001841 |
| ProSiteProfiles | PS51015 | YDG domain profile. | 271 | 420 | 50.807709 | IPR003105 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 12 | 57 | - | IPR019786 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 529 | 538 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 680 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 790 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 638 | - | - |
| Coils | Coil | Coil | 610 | 630 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G57820.1 | Zinc finger (C3HC4-type RING finger) family protein. Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts. | 0 |
| RefSeq | XP_037480438.1 | E3 ubiquitin-protein ligase ORTHRUS 2-like [Triticum dicoccoides] | 0 |
| Q8VYZ0 | E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana OX=3702 GN=ORTH2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5XT84 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC1AG000340.