Basic Information
Locus ID:
gene:ENSEOMG00000053071
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 9 | 2646255 | 2647186 | - | gene:ENSEOMG00000053071 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 12,925.03 Da | 29.25 | 43.74 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 42 | 57 | 7.7E-8 | IPR001878 |
| Pfam | PF00098 | Zinc knuckle | 1 | 11 | 3.2E-4 | IPR001878 |
| Pfam | PF00098 | Zinc knuckle | 74 | 85 | 3.4E-4 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 30 | 62 | 1.06E-9 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 30 | 93 | 5.4E-13 | - |
| SMART | SM00343 | c2hcfinal6 | 75 | 91 | 0.81 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 42 | 58 | 5.5E-5 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 1 | 12 | 0.69 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 43 | 57 | 10.559273 | IPR001878 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021724756.1 | DNA-binding protein HEXBP-like [Chenopodium quinoa] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21765, jg24630 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12122, gene_3 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah009100, Ah017240, Ah017906, Ah017907 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g090750, BVRB_8g184270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18552, Sbi_jg36957 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4823 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017305 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23593, Sgl28793, Sgl28801, Sgl46569 |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000010089, gene:ENSEOMG00000010644 ... |
| Amaranthaceae | Chenopodium quinoa | 8 | CQ.Regalona.r1.2AG0007380, CQ.Regalona.r1.2BG0000590 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30151850, pistato.v30152140 |
| Apiaceae | Apium graveolens | 1 | Ag2G01718 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G008660, COCNU_14G005730 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708154, gene-LOC103709296 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.1354.V1.1, AsparagusV1_02.1627.V1.1 ... |
| Asteraceae | Flaveria trinervia | 6 | Ftri15G04615, Ftri15G21532, Ftri15G27378, Ftri16G07414 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G17190.1, AT5G47770.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000912m.g.v1.0, Thhalv10025643m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g12470.v2.2, Sp7g17010.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g064330.2N, BniB04g010020.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1516, Ceq02G1421 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1678, Cgl02G1466 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05960 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1212s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g00260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9021 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2072, evm.TU.LG12.1291 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039157 |
| Plumbaginaceae | Limonium bicolor | 16 | Lb0G37119, Lb0G37120, Lb1G01399, Lb2G14145, Lb3G15725 ... |
| Poaceae | Echinochloa crus-galli | 13 | AH02.2849, AH02.2888, AH05.1560, AH09.2567, AH09.2568 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_1AG0030170, gene-QOZ80_1BG0080220 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0079800.1, HORVU.MOREX.r3.2HG0202590.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_016239, gene-QYE76_047038, gene-QYE76_047040 ... |
| Poaceae | Oryza coarctata | 9 | Oco01G018030, Oco01G018300, Oco02G018190, Oco02G018540 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g50050.1, LOC_Os01g50760.1, LOC_Os04g56210.1 ... |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_03G242500, gene-BS78_03G247700 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0300549, Pt_Chr0300570, Pt_Chr0307281, Pt_Chr0503835 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G014950, Chr02G011820, Chr05G021850, Chr18G015010 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G593700, Tel2E01G849200, Tel3E01G427600 ... |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC1AG053720, gene_TRIDC1BG061520 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS1A02G365800.1, TraesCS1B02G383400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb155590_P001, Zm00001eb342550_P002 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-12673, nbis-gene-13789, nbis-gene-24985 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g10970, Zma_g20595, Zma_g22130, Zma_g27306, Zma_g28713 ... |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG02.616, evm.TU.LG09.2062, evm.TU.LG15.1460 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g22310, gene.Posoc02g22320 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.51, evm.TU.Scaffold_8_RagTag.349 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-19700, nbisL1-mrna-19701, nbisL1-mrna-20058 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15503 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17954, nbisL1-mrna-22351 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.769, evm.TU.utg000028l.29 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003684, Maker00010753 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3232, nbisL1-mrna-7985 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11264, nbisL1-mrna-22574 |
| Salicaceae | Populus euphratica | 1 | populus_peu10476 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627819, gene-LOC132636283 |
| Solanaceae | Solanum chilense | 3 | SOLCI005895800, SOLCI007039200, SOLCI007039400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107001694, gene-LOC107001695, gene-LOC107007637 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17882, gene_4063 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2572, TC06G0542 |
| Zosteraceae | Zostera marina | 2 | Zosma01g03700.v3.1, Zosma04g17780.v3.1 |