Basic Information
Locus ID:
gene:ENSEOMG00000053025
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 9 | 319925 | 329309 | + | gene:ENSEOMG00000053025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 51,736.76 Da | 48.39 | 90.39 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 305 | 409 | 2.87547E-54 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 2 | 126 | 1.6E-12 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 165 | 201 | 5.5E-9 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 304 | 400 | 6.4E-15 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 160 | 207 | 5.5E-12 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 57 | 456 | 1.26E-55 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 215 | 8.7E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 64 | 458 | 7.7E-62 | IPR027417 |
| SMART | SM00490 | helicmild6 | 317 | 400 | 2.7E-15 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 204 | 11.471321 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 273 | 453 | 13.750519 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 180 | 189 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021735489.1 | helicase-like transcription factor CHR28 isoform X1 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LS17 | Helicase-like transcription factor CHR28 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology