HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene:ENSEOMG00000052346
Species & Taxonomic ID: Chenopodium album & 3559
Genome Assembly: GCA_948465745.1
Description: LRR-repeat protein
Maps and Mapping Data
Chromosome Start End Strand ID
9 1823288 1828621 - gene:ENSEOMG00000052346
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.17 47,120.58 Da 37.01 111.74 0.24
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 18 57 3.4E-5 IPR001810
SUPERFAMILY SSF52047 RNI-like 156 325 2.94E-14 -
SUPERFAMILY SSF81383 F-box domain 14 63 1.44E-9 IPR036047
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 42 343 1.6E-16 IPR032675
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G56410.1 Protein with RNI-like/FBD-like domains. 0
RefSeq XP_021735397.1 putative FBD-associated F-box protein At5g56410 [Chenopodium quinoa] 0
Swiss-Prot Q9FM90 Putative FBD-associated F-box protein At5g56410 OS=Arabidopsis thaliana OX=3702 GN=At5g56410 PE=4 SV=1 0
TrEMBL A0A803LRV0 F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 4 jg16990, jg16992, jg27968, jg9476
Aizoaceae Mesembryanthemum crystallinum 6 gene_17890, gene_23843, gene_23845, gene_26069, gene_26076 ...
gene_8928
Amaranthaceae Atriplex hortensis 15 Ah003492, Ah003713, Ah007308, Ah011333, Ah011344, Ah011345 ...
Ah011352, Ah017555, Ah022045, Ah028504, Ah033039, Ah033040, Ah033075, Ah035474, Ah038475
Amaranthaceae Beta vulgaris 5 BVRB_2g026890, BVRB_9g204170, BVRB_9g211600, BVRB_9g211710 ...
BVRB_9g211720
Amaranthaceae Salicornia bigelovii 6 Sbi_jg12067, Sbi_jg12074, Sbi_jg21899, Sbi_jg46991 ...
Sbi_jg46997, Sbi_jg46998
Amaranthaceae Salicornia europaea 4 Seu_jg15849, Seu_jg20904, Seu_jg21273, Seu_jg21278
Amaranthaceae Suaeda aralocaspica 9 GOSA_00008468, GOSA_00009619, GOSA_00009624, GOSA_00009625 ...
GOSA_00009626, GOSA_00009627, GOSA_00024068, GOSA_00024069, GOSA_00028233
Amaranthaceae Suaeda glauca 24 Sgl21428, Sgl53024, Sgl58299, Sgl63149, Sgl63284, Sgl63728 ...
Sgl63738, Sgl63739, Sgl63740, Sgl67763, Sgl68229, Sgl68230, Sgl68232, Sgl80475, Sgl80479, Sgl80481, Sgl80483, Sgl80484, Sgl82932, Sgl82936, Sgl82937, Sgl82939, Sgl82941, Sgl82942
Amaranthaceae Chenopodium album 15 gene:ENSEOMG00000009238, gene:ENSEOMG00000015328 ...
gene:ENSEOMG00000015409, gene:ENSEOMG00000016908, gene:ENSEOMG00000016955, gene:ENSEOMG00000018236, gene:ENSEOMG00000019663, gene:ENSEOMG00000020668, gene:ENSEOMG00000042248, gene:ENSEOMG00000050047, gene:ENSEOMG00000050424, gene:ENSEOMG00000050635, gene:ENSEOMG00000051975, gene:ENSEOMG00000052346, gene:ENSEOMG00000053019
Amaranthaceae Chenopodium quinoa 15 CQ.Regalona.r1.2AG0010070, CQ.Regalona.r1.2AG0019370 ...
CQ.Regalona.r1.2BG0008820, CQ.Regalona.r1.2BG0011640, CQ.Regalona.r1.2BG0011700, CQ.Regalona.r1.2BG0021080, CQ.Regalona.r1.2BG0021090, CQ.Regalona.r1.2BG0021100, CQ.Regalona.r1.2BG0021110, CQ.Regalona.r1.9AG0011500, CQ.Regalona.r1.9BG0010960, CQ.Regalona.r1.9BG0010980, CQ.Regalona.r1.9BG0011000, CQ.Regalona.r1.9BG0021180, CQ.Regalona.r1.9BG0021200
Anacardiaceae Pistacia vera 7 pistato.v30081860, pistato.v30081870, pistato.v30081880 ...
pistato.v30081890, pistato.v30164750, pistato.v30209840, pistato.v30283190
Apiaceae Apium graveolens 1 Ag1G00384
Asteraceae Flaveria trinervia 3 Ftri13G25356, Ftri18G18017, Ftri6G11251
Casuarinaceae Casuarina equisetifolia 1 Ceq02G0902
Casuarinaceae Casuarina glauca 1 Cgl02G0915
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-788
Nitrariaceae Nitraria sibirica 16 evm.TU.LG01.1927, evm.TU.LG01.305, evm.TU.LG01.327 ...
evm.TU.LG01.356, evm.TU.LG01.683, evm.TU.LG01.726, evm.TU.LG01.727, evm.TU.LG01.728, evm.TU.LG02.2125, evm.TU.LG04.1935, evm.TU.LG04.1937, evm.TU.LG04.2275, evm.TU.LG05.375, evm.TU.LG05.378, evm.TU.LG06.972, evm.TU.LG06.974
Plantaginaceae Plantago ovata 4 Pov_00014477, Pov_00020690, Pov_00032420, Pov_00036996
Poaceae Lolium multiflorum 1 gene-QYE76_068143
Portulacaceae Portulaca oleracea 7 evm.TU.LG04.3334, evm.TU.LG04.3336, evm.TU.LG04.3338 ...
evm.TU.LG16.260, evm.TU.LG16.261, evm.TU.LG16.262, evm.TU.LG16.263
Rhizophoraceae Bruguiera sexangula 9 evm.TU.58473.3, evm.TU.58474.3 ...
evm.TU.Scaffold_10_RagTag.1290, evm.TU.Scaffold_10_RagTag.1331, evm.TU.Scaffold_10_RagTag.1332, evm.TU.Scaffold_10_RagTag.1333, evm.TU.Scaffold_10_RagTag.1336, evm.TU.Scaffold_18_RagTag.532, evm.TU.Scaffold_18_RagTag.533
Rhizophoraceae Carallia pectinifolia 19 nbisL1-mrna-27616, nbisL1-mrna-27618, nbisL1-mrna-27622 ...
nbisL1-mrna-27625, nbisL1-mrna-27697, nbisL1-mrna-27702, nbisL1-mrna-27704, nbisL1-mrna-27905, nbisL1-mrna-27907, nbisL1-mrna-27909, nbisL1-mrna-27985, nbisL1-mrna-27987, nbisL1-mrna-27988, nbisL1-mrna-7005, nbisL1-mrna-7058, nbisL1-mrna-7059, nbisL1-mrna-7060, nbisL1-mrna-7061, nbisL1-mrna-7065
Rhizophoraceae Ceriops tagal 6 nbisL1-mrna-10287, nbisL1-mrna-12046, nbisL1-mrna-18898 ...
nbisL1-mrna-18899, nbisL1-mrna-8061, nbisL1-mrna-8062
Rhizophoraceae Ceriops zippeliana 6 nbisL1-mrna-11052, nbisL1-mrna-7949, nbisL1-mrna-8010 ...
nbisL1-mrna-8788, nbisL1-mrna-8789, nbisL1-mrna-8837
Rhizophoraceae Kandelia candel 6 add.evm.TU.utg000023l.32, evm.TU.utg000004l.83 ...
evm.TU.utg000006l.823, evm.TU.utg000023l.139, evm.TU.utg000023l.90, evm.TU.utg000033l.565
Rhizophoraceae Kandelia obovata 2 Maker00014848, Maker00018808
Rhizophoraceae Rhizophora apiculata 6 nbisL1-mrna-16397, nbisL1-mrna-16436, nbisL1-mrna-19692 ...
nbisL1-mrna-20832, nbisL1-mrna-23431, nbisL1-mrna-7349
Rhizophoraceae Rhizophora mangle 6 nbisL1-mrna-17932, nbisL1-mrna-17935, nbisL1-mrna-17988 ...
nbisL1-mrna-21301, nbisL1-mrna-21303, nbisL1-mrna-21364
Salicaceae Populus euphratica 8 populus_peu00619, populus_peu16916, populus_peu24661 ...
populus_peu24662, populus_peu24664, populus_peu24675, populus_peu24676, populus_peu30273
Solanaceae Lycium barbarum 21 gene-LOC132601784, gene-LOC132601790, gene-LOC132610625 ...
gene-LOC132611099, gene-LOC132611566, gene-LOC132611567, gene-LOC132611651, gene-LOC132611738, gene-LOC132615103, gene-LOC132616224, gene-LOC132618779, gene-LOC132619204, gene-LOC132619293, gene-LOC132619703, gene-LOC132628759, gene-LOC132631532, gene-LOC132633437, gene-LOC132633439, gene-LOC132637401, gene-LOC132638367, gene-LOC132642006
Solanaceae Solanum chilense 9 SOLCI001031400, SOLCI001031500, SOLCI003560900 ...
SOLCI003561100, SOLCI003839000, SOLCI004517500, SOLCI005665000, SOLCI006910300, SOLCI007377100
Solanaceae Solanum pennellii 13 gene-LOC107003547, gene-LOC107014443, gene-LOC107022870 ...
gene-LOC107024245, gene-LOC107029760, gene-LOC107029892, gene-LOC107030419, gene-LOC107030421, gene-LOC107030424, gene-LOC114073980, gene-LOC114073981, gene-LOC114074087, gene-LOC114078590
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.