Basic Information
Locus ID:
gene:ENSEOMG00000052335
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 9 | 60647825 | 60654130 | + | gene:ENSEOMG00000052335 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 80,208.30 Da | 47.02 | 84.45 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 51 | 206 | 6.80299E-28 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 356 | 7.8E-110 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 423 | 491 | 5.2E-6 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 359 | 399 | 4.7E-8 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 82 | 155 | 4.8E-5 | IPR002934 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 359 | 485 | 2.94E-32 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 207 | 356 | 6.28E-64 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 9 | 205 | 1.96E-49 | IPR043519 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 44 | 200 | 3.3E-154 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 359 | 474 | 6.5E-25 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 12 | 354 | 3.3E-154 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 652 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 555 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 528 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021749857.1 | nuclear poly(A) polymerase 4-like [Chenopodium quinoa] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MLX3 | polynucleotide adenylyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology