Basic Information
Locus ID:
gene:ENSEOMG00000051709
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 8 | 72605795 | 72611776 | + | gene:ENSEOMG00000051709 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 42,587.08 Da | 46.21 | 81.83 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 155 | 204 | 2.76957E-31 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.26604E-28 | - |
| Pfam | PF00627 | UBA/TS-N domain | 161 | 199 | 1.4E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 5.3E-20 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 278 | 333 | 1.3E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 359 | 394 | 1.1E-11 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 81 | 6.68E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 158 | 212 | 1.84E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 340 | 401 | 1.17E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 275 | 340 | 3.14E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 268 | 334 | 7.7E-28 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 352 | 399 | 1.0E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 154 | 204 | 1.1E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.1E-26 | - |
| SMART | SM00727 | CBM | 276 | 319 | 1.3E-4 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 8.6E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 359 | 396 | 4.7E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 161 | 201 | 6.1E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 401 | 4.7E-111 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 356 | 397 | 13.703554 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 159 | 202 | 12.932447 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.499079 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 370 | 384 | 8.8E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 353 | 369 | 8.8E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 385 | 400 | 8.8E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 304 | 326 | 8.8E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 119 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021755143.1 | ubiquitin receptor RAD23d-like [Chenopodium quinoa] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803M4E8 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology