Basic Information
Locus ID:
gene:ENSEOMG00000051579
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CAOKFF010000056.1 | 87442 | 90481 | - | gene:ENSEOMG00000051579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 46,117.68 Da | 62.17 | 62.84 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 218 | 282 | 2.34585E-22 | - |
| CDD | cd16872 | ARID_HMGB9-like | 22 | 107 | 1.74572E-46 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 23 | 107 | 2.9E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 218 | 285 | 3.1E-16 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 18 | 114 | 1.44E-27 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 211 | 290 | 1.57E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 12 | 119 | 3.8E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 200 | 294 | 3.1E-22 | IPR036910 |
| SMART | SM01014 | ARID_2 | 17 | 107 | 9.5E-28 | - |
| SMART | SM00501 | bright_3 | 21 | 112 | 1.3E-24 | IPR001606 |
| SMART | SM00398 | hmgende2 | 217 | 286 | 4.9E-20 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 20 | 111 | 25.403498 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 218 | 285 | 15.987444 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 226 | - | - |
| Coils | Coil | Coil | 267 | 287 | - | - |
| Coils | Coil | Coil | 332 | 352 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021749149.1 | high mobility group B protein 15-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LZC3 | High mobility group B protein 15-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology