Basic Information
Locus ID:
gene:ENSEOMG00000051238
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 8 | 76580775 | 76587953 | + | gene:ENSEOMG00000051238 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 59,237.01 Da | 31.29 | 103.92 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 220 | 322 | 4.24009E-25 | - |
| CDD | cd00030 | C2 | 398 | 494 | 1.63026E-26 | - |
| Pfam | PF00168 | C2 domain | 396 | 488 | 7.0E-26 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 25 | 204 | 5.6E-16 | IPR039010 |
| Pfam | PF00168 | C2 domain | 218 | 322 | 2.9E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 216 | 347 | 1.57E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 394 | 515 | 2.56E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 214 | 357 | 8.6E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 377 | 514 | 1.1E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 397 | 495 | 8.7E-23 | IPR000008 |
| SMART | SM00239 | C2_3c | 219 | 319 | 2.9E-22 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 23 | 205 | 30.205578 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 199 | 320 | 20.882498 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 377 | 496 | 21.408024 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 413 | 425 | 8.6E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 439 | 452 | 8.6E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 461 | 469 | 8.6E-8 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021769371.1 | synaptotagmin-5-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RI35 | Synaptotagmin-5 (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_064340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology