Basic Information
Locus ID:
gene:ENSEOMG00000051042
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7 | 4025601 | 4027974 | + | gene:ENSEOMG00000051042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 33,650.83 Da | 57.91 | 71.22 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 213 | 278 | 6.28982E-20 | - |
| CDD | cd16872 | ARID_HMGB9-like | 26 | 110 | 5.75484E-39 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 213 | 281 | 2.6E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 27 | 110 | 6.8E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 17 | 126 | 2.75E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 204 | 284 | 6.68E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 14 | 126 | 2.6E-25 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 197 | 293 | 3.0E-20 | IPR036910 |
| SMART | SM01014 | ARID_2 | 20 | 110 | 1.5E-26 | - |
| SMART | SM00398 | hmgende2 | 212 | 282 | 1.1E-17 | IPR009071 |
| SMART | SM00501 | bright_3 | 24 | 115 | 8.8E-26 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 23 | 114 | 25.108122 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 213 | 281 | 15.187242 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 212 | - | - |
| Coils | Coil | Coil | 263 | 290 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021737119.1 | high mobility group B protein 9-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MX19 | High mobility group B protein 9 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology