Basic Information
Locus ID:
gene:ENSEOMG00000050780
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| 9 | 71535574 | 71537367 | + | gene:ENSEOMG00000050780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 43,605.90 Da | 52.11 | 84.02 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 228 | 271 | 8.13372E-18 | - |
| Pfam | PF13639 | Ring finger domain | 228 | 271 | 4.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 222 | 278 | 4.8E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 277 | 1.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 229 | 270 | 6.7E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 225 | 276 | 0.0039 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 229 | 271 | 12.872856 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 353 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021769957.1 | putative RING-H2 finger protein ATL53 [Chenopodium quinoa] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LEW9 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg10876, Sbi_jg47444 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21691 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018752 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55618, Sgl60828 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018204, gene:ENSEOMG00000038713 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0027790, CQ.Regalona.r1.7BG0001610 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG15.1210 |