Basic Information
Locus ID:
gene:ENSEOMG00000049535
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 9 | 66818621 | 66824751 | - | gene:ENSEOMG00000049535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 136,824.83 Da | 35.85 | 89.85 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 11 | 319 | 6.07679E-76 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 200 | 233 | 3.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 86 | 123 | 2.6E-8 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 831 | 1214 | 1.3E-166 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 278 | 3.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 47 | 81 | 6.5E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 343 | 770 | 9.0E-133 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 128 | 165 | 1.7E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 317 | 5.8E-74 | IPR036322 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 238 | 550 | 2.46E-16 | IPR011048 |
| Gene3D | G3DSA:1.25.40.470 | - | 642 | 814 | 6.6E-64 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 321 | 2.1E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 195 | 234 | 4.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 319 | 90.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 126 | 165 | 7.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 84 | 123 | 6.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 278 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 42 | 81 | 9.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 39 | 44.0 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1210 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 246 | 287 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 202 | 236 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 133 | 174 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 91 | 132 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 202 | 243 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 49 | 81 | 10.363778 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 246 | 279 | 12.156496 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 133 | 166 | 12.631039 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 91 | 123 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 49 | 90 | 12.714052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 152 | 166 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 110 | 124 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 265 | 279 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 152 | 166 | 2.2E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_021738685.1 | coatomer subunit alpha-1-like [Chenopodium quinoa] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LPB8 | Coatomer subunit alpha OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology