Basic Information
Locus ID:
gene:ENSEOMG00000048384
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
histone deacetylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6 | 18917282 | 18921035 | - | gene:ENSEOMG00000048384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 17,816.98 Da | 49.86 | 77.36 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 59 | 117 | 1.3E-15 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 36 | 125 | 2.35E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 140 | 2.2E-28 | IPR013083 |
| SMART | SM00290 | Zf_UBP_1 | 58 | 107 | 6.8E-9 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 57 | 118 | 16.252256 | IPR001607 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14825.1 | - | 0 |
| RefSeq | XP_021750997.1 | histone deacetylase 6-like [Chenopodium quinoa] | 0 |
| A0A8I6GM68 | Protein deacetylase HDAC6 OS=Rattus norvegicus OX=10116 GN=Hdac6 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803MKJ6 | UBP-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30213 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9494 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015819 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190350 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25312, Sbi_jg9162 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19427 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011187 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42949, Sgl47782 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000034159, gene:ENSEOMG00000048384 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0011600 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30106020, pistato.v30106030, pistato.v30106240 ... |
| Apiaceae | Apium graveolens | 2 | Ag1G00849, Ag5G01453 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G006640 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695865, gene-LOC120113229 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G05249 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022899m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g28020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g037630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0285 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0321 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09340 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g21920 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.586 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012013, Pov_00022435 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16654 |
| Poaceae | Echinochloa crus-galli | 2 | AH05.3576, CH05.3760 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0391890, gene-QOZ80_5BG0439320 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0448420.1 |
| Poaceae | Oryza coarctata | 2 | Oco23G007250, Oco24G006860 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g32374.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G080800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703574 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G015830, Chr06G016540, Chr19G010180, Chr27G006220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G197300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG016090, gene_TRIDC5BG017910 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G105700.1, TraesCS5B02G107800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb137960_P003, Zm00001eb264700_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48639 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25108 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2636, evm.TU.LG08.233 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.399 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4796 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9514 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-9755, nbisL1-mrna-9756 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.721 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005114 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2544 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16488 |
| Salicaceae | Populus euphratica | 1 | populus_peu36229 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606483 |
| Solanaceae | Solanum chilense | 1 | SOLCI003702700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032407 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14562_chr08_- |
| Zosteraceae | Zostera marina | 1 | Zosma05g22570.v3.1 |