Basic Information
Locus ID:
gene:ENSEOMG00000048108
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6 | 4972090 | 4982188 | - | gene:ENSEOMG00000048108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 124,603.06 Da | 38.94 | 77.81 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 919 | 952 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 497 | 535 | 0.13 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 839 | 1097 | 8.42E-36 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 353 | 668 | 1.19E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 318 | 516 | 5.7E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 696 | 5.2E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 775 | 1104 | 3.5E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 541 | 582 | 29.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.8E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 0.0015 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.1E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1004 | 1045 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 825 | 867 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 913 | 952 | 7.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.0059 | IPR001680 |
| SMART | SM00320 | WD40_4 | 870 | 910 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 6.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.632046 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.694066 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 920 | 961 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 920 | 954 | 10.205597 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1131 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_021760766.1 | topless-related protein 4-like [Chenopodium quinoa] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LH73 | Topless-related protein 4-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology