Basic Information
Locus ID:
gene:ENSEOMG00000047530
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 7 | 76006551 | 76009780 | - | gene:ENSEOMG00000047530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 37,223.98 Da | 43.83 | 68.06 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 177 | 305 | 2.87571E-68 | - |
| CDD | cd16571 | RING-HC_SIAHs | 61 | 99 | 6.81024E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 105 | 304 | 1.7E-79 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 57 | 103 | 8.54E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 116 | 308 | 6.54E-48 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 174 | 304 | 8.5E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 115 | 6.4E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 171 | 9.5E-18 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 63 | 99 | 9.509172 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 116 | 176 | 14.211109 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_021748303.1 | E3 ubiquitin-protein ligase SINAT5-like [Chenopodium quinoa] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RGS5 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_073390 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology