Basic Information
Locus ID:
gene:ENSEOMG00000046577
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6 | 73799249 | 73809635 | - | gene:ENSEOMG00000046577 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 104,333.44 Da | 56.74 | 81.88 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 233 | 367 | 8.41281E-21 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 256 | 365 | 5.0E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 765 | 805 | 9.8E-5 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 742 | 805 | 1.34E-9 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 135 | 393 | 4.94E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 866 | 926 | 3.47E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 135 | 397 | 5.6E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 744 | 820 | 8.1E-6 | - |
| SMART | SM00577 | forpap2 | 200 | 376 | 2.1E-13 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 868 | 936 | 0.08 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 742 | 806 | 1.6E-7 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 741 | 807 | 10.460249 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 141 | 389 | 15.152925 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 856 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 835 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 702 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_021726412.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Chenopodium quinoa] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LPU6 | protein-serine/threonine phosphatase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology