Basic Information
Locus ID:
gene:ENSEOMG00000045736
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 6 | 74113923 | 74124113 | - | gene:ENSEOMG00000045736 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 126,524.33 Da | 46.01 | 78.66 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 994 | 1101 | 3.61585E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 416 | 721 | 9.36071E-90 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 991 | 1091 | 4.5E-16 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 837 | 873 | 8.0E-6 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 437 | 799 | 1.3E-69 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 400 | 721 | 1.09E-43 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 730 | 1148 | 2.1E-57 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 833 | 880 | 3.95E-10 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 734 | 830 | 1.6E-5 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 900 | 1148 | 1.7E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 394 | 568 | 1.8E-22 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 569 | 733 | 5.3E-30 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 831 | 889 | 3.8E-11 | IPR013083 |
| SMART | SM00487 | ultradead3 | 412 | 700 | 6.5E-27 | IPR014001 |
| SMART | SM00184 | ring_2 | 837 | 875 | 3.5E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1008 | 1091 | 1.8E-19 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 837 | 873 | 10.600894 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 985 | 1144 | 15.333968 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 431 | 683 | 13.388712 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 852 | 861 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 611 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021726387.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LLB4 | Helicase ATP-binding domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology