Basic Information
Locus ID:
gene:ENSEOMG00000045532
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5 | 15969550 | 15983991 | + | gene:ENSEOMG00000045532 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.37 | 40,799.82 Da | 55.80 | 84.19 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.36965E-28 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 8.5E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 153 | 191 | 3.5E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 252 | 307 | 4.8E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 332 | 368 | 2.5E-11 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 248 | 315 | 3.27E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 83 | 4.14E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 150 | 200 | 6.06E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 312 | 374 | 6.54E-15 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 146 | 196 | 1.8E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.1E-25 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 242 | 307 | 4.2E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 324 | 373 | 3.1E-22 | - |
| SMART | SM00727 | CBM | 250 | 293 | 2.2E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 153 | 193 | 3.2E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.9E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 333 | 370 | 5.2E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 376 | 9.0E-127 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.865925 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 151 | 194 | 12.209535 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 331 | 371 | 14.715632 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 327 | 343 | 8.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 278 | 300 | 8.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 359 | 374 | 8.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 344 | 358 | 8.6E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 131 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021751706.1 | probable ubiquitin receptor RAD23a [Chenopodium quinoa] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A0J8BCQ7 | Ubiquitin receptor RAD23 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g124190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology