Basic Information
Locus ID:
gene:ENSEOMG00000044935
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5 | 14634262 | 14636279 | + | gene:ENSEOMG00000044935 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 28,453.68 Da | 42.88 | 86.27 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 2 | 217 | 8.9E-71 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 1 | 251 | 2.39E-86 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 1 | 250 | 4.0E-82 | IPR012334 |
| SMART | SM00710 | pbh1 | 30 | 56 | 810.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 139 | 160 | 2800.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 110 | 131 | 16.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 57 | 78 | 3500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 80 | 100 | 3100.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 87 | 100 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021756995.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CPJ4 | Polygalacturonase At1g80170 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_3g059660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology