Basic Information
Locus ID:
gene:ENSEOMG00000044111
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| 5 | 14754280 | 14763258 | - | gene:ENSEOMG00000044111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.93 | 116,742.49 Da | 67.44 | 56.01 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 52 | 1.17131E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 616 | 745 | 5.36561E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 628 | 736 | 5.2E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 421 | 591 | 4.8E-49 | IPR011545 |
| Pfam | PF00397 | WW domain | 22 | 52 | 2.6E-7 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 52 | 4.45E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 469 | 751 | 5.87E-75 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 55 | 3.5E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 606 | 777 | 5.2E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 385 | 605 | 7.2E-87 | IPR027417 |
| SMART | SM00487 | ultradead3 | 416 | 619 | 2.1E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 652 | 736 | 6.0E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 4.0E-8 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.8415 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 428 | 602 | 31.320377 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 631 | 775 | 25.347542 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 397 | 425 | 11.408521 | IPR014014 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 548 | 556 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 928 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 801 | 1043 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 929 | 952 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 850 | 865 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 953 | 983 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 984 | 1012 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021757000.1 | DEAD-box ATP-dependent RNA helicase 40-like [Chenopodium quinoa] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW2 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology