Basic Information
Locus ID:
gene:ENSEOMG00000043082
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4 | 47355268 | 47366392 | + | gene:ENSEOMG00000043082 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 74,963.89 Da | 53.12 | 65.26 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 378 | 507 | 9.11605E-65 | - |
| CDD | cd00201 | WW | 21 | 50 | 1.36924E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 390 | 498 | 1.1E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 183 | 353 | 5.1E-50 | IPR011545 |
| Pfam | PF00397 | WW domain | 20 | 50 | 2.2E-6 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 231 | 514 | 5.27E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 53 | 2.23E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 136 | 367 | 1.5E-88 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 15 | 62 | 3.1E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 368 | 539 | 5.9E-60 | IPR027417 |
| SMART | SM00456 | ww_5 | 19 | 52 | 8.5E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 178 | 381 | 2.9E-63 | IPR014001 |
| SMART | SM00490 | helicmild6 | 418 | 498 | 1.7E-34 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 190 | 364 | 29.723377 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 18 | 52 | 11.230801 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 393 | 537 | 25.735935 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 159 | 187 | 10.568982 | IPR014014 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 24 | 50 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 310 | 318 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 686 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021733054.1 | ATP-dependent RNA helicase-like protein DB10 [Chenopodium quinoa] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MUF8 | DEAD-box ATP-dependent RNA helicase 46 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology