Basic Information
Locus ID:
gene:ENSEOMG00000042429
Species & Taxonomic ID:
Chenopodium album & 3559
Genome Assembly:
GCA_948465745.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 4 | 6995787 | 7000251 | - | gene:ENSEOMG00000042429 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 69,769.87 Da | 46.27 | 82.91 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 215 | 412 | 1.12432E-93 | - |
| CDD | cd18794 | SF2_C_RecQ | 413 | 546 | 4.22831E-66 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 223 | 389 | 7.3E-16 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 429 | 536 | 3.3E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 549 | 617 | 1.5E-12 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 260 | 557 | 8.33E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 179 | 412 | 8.8E-82 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 413 | 621 | 4.8E-60 | IPR027417 |
| SMART | SM00490 | helicmild6 | 455 | 537 | 6.8E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 217 | 421 | 4.7E-25 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 215 | 619 | 3.1E-152 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 427 | 577 | 18.754814 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 229 | 405 | 19.085096 | IPR014001 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021742657.1 | ATP-dependent DNA helicase Q-like 1 [Chenopodium quinoa] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QQ50 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_153870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology