halophFGD

Basic Information

Locus ID: gene:ENSEOMG00000042009

Species & Taxonomic ID: Chenopodium album & 3559

Genome Assembly: GCA_948465745.1

Description: Ubiquitin carboxyl-terminal hydrolase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
3	84842017	84843588	-	gene:ENSEOMG00000042009

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.68	23,322.08 Da	32.10	72.00	-0.44

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00121	MATH	1	114	2.35622E-35	IPR002083
Pfam	PF00917	MATH domain	4	116	7.9E-19	IPR002083
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	134	166	3.4E-9	IPR001394
SUPERFAMILY	SSF49599	TRAF domain-like	4	123	7.03E-36	-
SUPERFAMILY	SSF54001	Cysteine proteinases	124	196	1.0E-15	IPR038765
Gene3D	G3DSA:2.20.210.10	-	174	198	2.5E-5	-
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	131	163	2.1E-11	-
Gene3D	G3DSA:2.60.210.10	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	1	130	2.4E-47	IPR008974
SMART	SM00061	math_3	1	95	8.2E-13	IPR002083
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	134	200	11.163444	IPR028889
ProSiteProfiles	PS50144	MATH/TRAF domain profile.	1	114	33.098984	IPR002083
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	135	150	-	IPR018200

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity) GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11838 (ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12])

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G06600.3	ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease.
RefSeq	XP_021715622.1	ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Chenopodium quinoa]
Swiss-Prot	Q9FPT1	Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2
TrEMBL	A0A0K9RR35	Ubiquitinyl hydrolase 1 (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_037780 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000020776, gene:ENSEOMG00000042009
Anacardiaceae	Pistacia vera	2	pistato.v30053150, pistato.v30053760
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ... AsparagusV1_09.696.V1.1
Brassicaceae	Arabidopsis thaliana	38	AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ... AT2G01790.1, AT2G05400.1, AT2G05410.1, AT2G05420.1, AT2G05430.1, AT2G42460.1, AT2G42470.1, AT2G42480.1, AT3G27040.1, AT3G29580.1, AT3G44790.1, AT3G44800.1, AT3G44805.1, AT3G58200.1, AT3G58210.1, AT3G58220.2, AT3G58230.1, AT3G58240.1, AT3G58250.1, AT3G58260.1, AT3G58270.1, AT3G58280.1, AT3G58290.1, AT3G58320.1, AT3G58330.1, AT3G58340.1, AT3G58350.1, AT3G58360.1, AT3G58370.1, AT3G58380.1, AT3G58400.1, AT3G58410.1, AT3G58430.1, AT3G58440.1
Brassicaceae	Eutrema salsugineum	38	Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ... Thhalv10006427m.g.v1.0, Thhalv10006437m.g.v1.0, Thhalv10006449m.g.v1.0, Thhalv10006467m.g.v1.0, Thhalv10006470m.g.v1.0, Thhalv10006486m.g.v1.0, Thhalv10008254m.g.v1.0, Thhalv10010958m.g.v1.0, Thhalv10011795m.g.v1.0, Thhalv10011971m.g.v1.0, Thhalv10011981m.g.v1.0, Thhalv10011998m.g.v1.0, Thhalv10012015m.g.v1.0, Thhalv10012031m.g.v1.0, Thhalv10012069m.g.v1.0, Thhalv10012071m.g.v1.0, Thhalv10012142m.g.v1.0, Thhalv10012179m.g.v1.0, Thhalv10016883m.g.v1.0, Thhalv10017071m.g.v1.0, Thhalv10017566m.g.v1.0, Thhalv10023572m.g.v1.0, Thhalv10023616m.g.v1.0, Thhalv10023897m.g.v1.0, Thhalv10023954m.g.v1.0, Thhalv10023996m.g.v1.0, Thhalv10024005m.g.v1.0, Thhalv10024153m.g.v1.0, Thhalv10026867m.g.v1.0, Thhalv10028053m.g.v1.0, Thhalv10028058m.g.v1.0, Thhalv10028109m.g.v1.0, Thhalv10028307m.g.v1.0, Thhalv10028318m.g.v1.0, Thhalv10029184m.g.v1.0, Thhalv10029219m.g.v1.0
Brassicaceae	Schrenkiella parvula	18	Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ... Sp4g24600.v2.2, Sp4g24610.v2.2, Sp5g04440.v2.2, Sp5g04450.v2.2, Sp5g04453.v2.2, Sp5g04457.v2.2, Sp5g04460.v2.2, Sp5g04480.v2.2, Sp5g04500.v2.2, Sp5g04510.v2.2, Sp5g21580.v2.2, Sp6g09200.v2.2, Sp6g09210.v2.2, Sp7g05400.v2.2, SpUn0053_0040.v2.2
Brassicaceae	Brassica nigra	59	BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ... BniB01g003450.2N, BniB01g025850.2N, BniB02g000230.2N, BniB02g001350.2N, BniB02g040450.2N, BniB02g049390.2N, BniB02g051720.2N, BniB03g001240.2N, BniB03g010160.2N, BniB03g011950.2N, BniB03g051100.2N, BniB03g052390.2N, BniB03g055960.2N, BniB04g020230.2N, BniB04g020250.2N, BniB04g020290.2N, BniB04g020300.2N, BniB04g020330.2N, BniB06g001540.2N, BniB06g054900.2N, BniB06g054910.2N, BniB06g054920.2N, BniB06g054930.2N, BniB06g054940.2N, BniB06g054960.2N, BniB06g054970.2N, BniB06g054980.2N, BniB06g054990.2N, BniB06g055000.2N, BniB06g055010.2N, BniB06g055020.2N, BniB06g055030.2N, BniB06g055040.2N, BniB06g055050.2N, BniB06g055060.2N, BniB06g055080.2N, BniB06g055090.2N, BniB06g055100.2N, BniB06g055120.2N, BniB06g055130.2N, BniB06g055140.2N, BniB06g055150.2N, BniB06g063480.2N, BniB06g063490.2N, BniB06g063500.2N, BniB06g063510.2N, BniB06g063530.2N, BniB06g063540.2N, BniB07g008670.2N, BniB07g045970.2N, BniB07g046280.2N, BniB07g046490.2N, BniB08g027490.2N, BniB08g072890.2N, BniB08g072950.2N, BniB08g073000.2N
Casuarinaceae	Casuarina glauca	1	Cgl05G1118
Plantaginaceae	Plantago ovata	1	Pov_00021253
Poaceae	Zoysia japonica	1	nbis-gene-36802
Salicaceae	Populus euphratica	1	populus_peu12364
Solanaceae	Solanum pennellii	1	gene-LOC107019779
Zosteraceae	Zostera marina	6	Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ... Zosma03g10120.v3.1, Zosma05g15530.v3.1, Zosma05g17230.v3.1